hpo3
stable
Key concepts:
Getting started
Ontology
HPOTerm
HPOSet
BasicHPOSet
HPOPhenoSet
Annotations
Statistical Analysis
Helper functions
PyHPO vs hpo3
Info about likely API changes
hpo3
Index
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Index
A
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B
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C
|
E
|
F
|
G
|
H
|
I
|
L
|
M
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N
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O
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P
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R
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S
|
T
|
V
A
add() (HPOSet method)
all_genes() (HPOSet method)
all_parents (HPOTerm attribute)
B
batch_disease_enrichment() (in module pyhpo.helper)
batch_gene_enrichment() (in module pyhpo.helper)
batch_set_similarity() (in module pyhpo.helper)
batch_similarity() (in module pyhpo.helper)
C
categories (HPOTerm attribute)
child_nodes() (HPOSet method)
child_of() (HPOTerm method)
children (HPOTerm attribute)
combinations() (in module pyhpo.HPOSet)
combinations_one_way() (in module pyhpo.HPOSet)
common_ancestors() (HPOTerm method)
count_parents() (HPOTerm method)
E
enrichment() (EnrichmentModel method)
EnrichmentModel (class in pyhpo.stats)
F
from_disease() (in module pyhpo.HPOSet)
from_gene() (in module pyhpo.HPOSet)
from_queries() (in module pyhpo.HPOSet)
from_serialized() (in module pyhpo.HPOSet)
G
Gene (class in pyhpo)
gene (InformationContent attribute)
genes (__class__ attribute)
(HPOTerm attribute)
get() (Gene method)
(Omim method)
get_hpo_object() (in module pyhpo.Ontology.__class__)
H
hpo (Gene attribute)
(Omim attribute)
hpo() (in module pyhpo.Ontology.__class__)
hpo_set() (Gene method)
(Omim method)
HPOSet (class in pyhpo)
HPOTerm (class in pyhpo)
I
id (Gene attribute)
(HPOTerm attribute)
(Omim attribute)
information_content (HPOTerm attribute)
information_content() (HPOSet method)
InformationContent (class in pyhpo.types)
is_obsolete (HPOTerm attribute)
L
linkage() (in module pyhpo.stats)
M
match() (in module pyhpo.Ontology.__class__)
N
name (Gene attribute)
(HPOTerm attribute)
(Omim attribute)
O
Omim (class in pyhpo)
omim (InformationContent attribute)
omim_diseases (__class__ attribute)
(HPOTerm attribute)
omim_diseases() (HPOSet method)
P
parent_ids() (HPOTerm method)
parent_of() (HPOTerm method)
parents (HPOTerm attribute)
path() (in module pyhpo.Ontology.__class__)
path_to_other() (HPOTerm method)
R
remove_modifier() (HPOSet method)
replace() (HPOTerm method)
replace_obsolete() (HPOSet method)
replaced_by (HPOTerm attribute)
S
search() (in module pyhpo.Ontology.__class__)
serialize() (HPOSet method)
shortest_path_to_parent() (HPOTerm method)
shortest_path_to_root() (HPOTerm method)
similarity() (HPOSet method)
similarity_score() (HPOTerm method)
similarity_scores() (HPOSet method)
(HPOTerm method)
T
terms() (HPOSet method)
toJSON() (Gene method)
(HPOSet method)
(HPOTerm method)
(Omim method)
V
variance() (in module pyhpo.HPOSet)
version() (in module pyhpo.Ontology.__class__)
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